PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012954-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 316aa MW: 35042.1 Da PI: 7.5737

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012954-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	240	294	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtp+LHerFve v++LGG+ekAtPk il+lm+ +gLt+ hvkSHLQkYR+ NNU_012954-RA 240 KTRIRWTPDLHERFVESVNRLGGAEKATPKGILKLMDSEGLTIFHVKSHLQKYRI 294 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-29	238	295	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-16	238	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	240	295	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-7	244	293	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MNTRKTQFQE LNNGFASDYS FESFGRTYEN FTSQQPLNMG ACFQSPMPAL DGGSLQPNLR 60 PSNLASTISS HFGPPNSAFY ATERYMGFPQ YQYQSTRPCF SELPKNYEEP FSVNSERCDD 120 LDLQSRDSLQ SIVKLPFCSN QNARFSDISN QSSYTNFPGV ELHPLLPSKL MGEDATLDNR 180 NPSNPYKRNQ NPRIGYNPAT SPLAQPSLHV QSEKHALRPS GGVSVASGST VTSGAAPSSK 240 TRIRWTPDLH ERFVESVNRL GGAEKATPKG ILKLMDSEGL TIFHVKSHLQ KYRIAKYIPE 300 SAEGESLSPI SLLLVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-26	240	297	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-26	240	297	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-26	240	297	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-26	240	297	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265860.1	0.0	PREDICTED: myb family transcription factor PHL5-like
TrEMBL	A0A1U8ASR3	0.0	A0A1U8ASR3_NELNU; myb family transcription factor PHL5-like
STRING	XP_010265860.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	4e-35	G2-like family protein