PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012977-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 372aa MW: 41158.2 Da PI: 4.8083

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012977-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	6.9e-12	10	62	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 + W t+E++ll++av+++G+++W+++a +++ +t+ +ck ++++++ NNU_012977-RA 10 DTWGTWEELLLACAVNRHGTNRWDSVAMEIQtrsstlHPLTAQNCKQKYHDLK 62 68*****************************9999995589999999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.173	4	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	5	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.94E-7	6	70	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-7	8	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-10	10	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.45E-7	11	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAKNDDRQTD TWGTWEELLL ACAVNRHGTN RWDSVAMEIQ TRSSTLHPLT AQNCKQKYHD 60 LKRRFMAKDD KTDDGEDGSE PDDKKGEIPW LEELRKLRVA ELRREVQRYD VSIVSLQLKV 120 KRLKEERERS LREKESSVAK SDLEKDSEQD RAKEEKGEVD EQPEKSSPEN AAGARVSGEE 180 SDRENQSFNE SNSTDPKAEI RDNGVGETEK KREPVETVTG GPDPVSGESK PVGEGSYNGS 240 SDTVAKESAA APPIGKSLGA VKATVDGDSL ELWESVAESK GGGEEGMKES SDVQSSASLS 300 SKKNRKKTIS GSSSGEEPGT EEISPAIKRI SVKSQPLVAI LEIIRSHKHG SMFERRLDSQ 360 KNENNIESFL VE

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAKNDDRQTD TWGTWEELLL ACAVNRHGTN RWDSVAMEIQ TRSSTLHPLT AQNCKQKYHD  60
LKRRFMAKDD KTDDGEDGSE PDDKKGEIPW LEELRKLRVA ELRREVQRYD VSIVSLQLKV  120
KRLKEERERS LREKESSVAK SDLEKDSEQD RAKEEKGEVD EQPEKSSPEN AAGARVSGEE  180
SDRENQSFNE SNSTDPKAEI RDNGVGETEK KREPVETVTG GPDPVSGESK PVGEGSYNGS  240
SDTVAKESAA APPIGKSLGA VKATVDGDSL ELWESVAESK GGGEEGMKES SDVQSSASLS  300
SKKNRKKTIS GSSSGEEPGT EEISPAIKRI SVKSQPLVAI LEIIRSHKHG SMFERRLDSQ  360
KNENNIESFL VE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265891.1	0.0	PREDICTED: uncharacterized protein LOC104603529
TrEMBL	A0A1U8AST5	0.0	A0A1U8AST5_NELNU; uncharacterized protein LOC104603529
STRING	XP_010265891.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	7e-41	DNA-binding bromodomain-containing protein