PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012982-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 302aa    MW: 31617.1 Da    PI: 9.6276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012982-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08101126227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+ C+ f     Ck+Gd+C+FaH++
  NNU_012982-RA 101 KTRMCNKFNTAEGCKFGDKCHFAHSE 126
                    89**********************95 PP
2zf-CCCH38.32.3e-12269293126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt+lC +f++ G C +GdrC+FaHg
  NNU_012982-RA 269 YKTKLCENFSK-GSCTFGDRCHFAHG 293
                    9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.5633762IPR000571Zinc finger, CCCH-type
SMARTSM00356213761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1497131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-897130IPR000571Zinc finger, CCCH-type
SMARTSM003560.01899126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.64899127IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.04E-15166242IPR004088K Homology domain, type 1
SMARTSM003226.7E-13171241IPR004087K Homology domain
PROSITE profilePS5008414.613172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-16172240IPR004088K Homology domain, type 1
PfamPF000136.2E-12174238IPR004088K Homology domain, type 1
CDDcd001051.08E-14174236No hitNo description
Gene3DG3DSA:4.10.1000.105.1E-18264300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9265299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.953268295IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7268294IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9269293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFGAARKRG RGDLAFNGNG GIKRPKQEME SFTPGIGSKS KPCTNTAGCP FGEGCHFLHY  60
VPGGINTVAQ MTNLGNPAIP SSRNPVPPPH VPDGVSPSTV KTRMCNKFNT AEGCKFGDKC  120
HFAHSERELG KPNANAPSQE DPRIMGLMSG RLAGRLEPPP PGITAAASFG ASATAKISVD  180
ASLAGAIIGK GGVNSKQICR LTGAKLSIRE HESDPNLRNI ELEGTFDQIK QASAMVRELI  240
VNVGSMVAAA AQVKAQAAPA APAVPPSNYK TKLCENFSKG SCTFGDRCHF AHGATELRKP  300
AI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511ARKRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-113C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8AEB00.0A0A1U8AEB0_NELNU; zinc finger CCCH domain-containing protein 14-like
STRINGXP_010265899.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-55C3H family protein