PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012983-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 248aa    MW: 26837.4 Da    PI: 10.3519
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012983-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-18185219135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+ C t++TplWR+gp g+k+LCnaCG++y+k+++
  NNU_012983-RA 185 CAACETSTTPLWRNGPKGSKSLCNACGIRYKKEEK 219
                    9*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.914179215IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-17179236IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-12180221No hitNo description
CDDcd002022.75E-12184216No hitNo description
Gene3DG3DSA:3.30.50.101.8E-16184220IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-16185219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKEQDLLRRL EKFPGENPDI GVDCELRLGL SYSRPNPPQS QTNYRKIIYD SPPPPPSPPA  60
QVMGNYGMVN GNYGVMMNPR GASMNNGWGV NGSNQLTWLP AMVNHPSNNG NRRDGFSYYV  120
GSSSASGSNN PTVMNDFRRY AGAGAGAGGL LPIQMQRNNV TVMNNIIQMI PQPERPVAVG  180
PVKRCAACET STTPLWRNGP KGSKSLCNAC GIRYKKEEKK ASGSTDSPQK SKVGGSAKGR  240
DSTKKPKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265900.10.0PREDICTED: white collar 2 protein-like
RefseqXP_019054321.10.0PREDICTED: white collar 2 protein-like
RefseqXP_019054322.10.0PREDICTED: white collar 2 protein-like
RefseqXP_019054323.10.0PREDICTED: white collar 2 protein-like
TrEMBLA0A1U8Q8F10.0A0A1U8Q8F1_NELNU; white collar 2 protein-like
STRINGXP_010265900.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-18GATA transcription factor 20