PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013013-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 355aa    MW: 38344.5 Da    PI: 5.5423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013013-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17193247256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  NNU_013013-RA 193 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 247
                    778899***********************************************98 PP
2HD-ZIP_I/II127.84.5e-41193283192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  NNU_013013-RA 193 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 283
                    69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-7114149IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.99E-18187250IPR009057Homeodomain-like
PROSITE profilePS5007117.022189249IPR001356Homeobox domain
SMARTSM003898.7E-16191253IPR001356Homeobox domain
CDDcd000861.22E-15193250No hitNo description
Gene3DG3DSA:1.10.10.605.3E-17193247IPR009057Homeodomain-like
PfamPF000464.6E-15193247IPR001356Homeobox domain
PROSITE patternPS000270224247IPR017970Homeobox, conserved site
PfamPF021837.3E-11249283IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.8E-26249292IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELGLSLGDA SKAFPFVEKA RRISGSSSSS LGFCMGLGVG VVNGGEEDRI EVDEGEDGGG  60
DGQQREERRD SADPPVQLDL LPPGPVPRNP PSSSPLGFPW PTENGNCEAG SSGHLGASAR  120
GFDVNRLPAA EDADDGAAVS SPNSAVSSFQ MDFSIYRGAG GGSKKDAESA GNEVEAERAS  180
SRASDEEENG MTRKKLRLSK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ  240
NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELQELR ALKTSHPFYM QLPATTLTMC  300
PSCERVATTS TAPSAMTDAS ATTTPATNKA SAFSLTRPRF YPFSQAHAPH PSAAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197TRKKLRL
2241249RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265939.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-100HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8AS990.0A0A1U8AS99_NELNU; homeobox-leucine zipper protein HOX11-like
STRINGXP_010265939.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-69homeobox from Arabidopsis thaliana