PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013072-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 306aa    MW: 34560.1 Da    PI: 6.3812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013072-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-12183208126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C +Gd CkF+H+
  NNU_013072-RA 183 YQPDICKDYKETGYCGFGDACKFMHD 208
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-9181213IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7182209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577182210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-11183213IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9183208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADSGEPQQS EPVCNFFRKP SKNKNIRKRT IEEDDEDQED TSSVINKPKK VTKPDNKLHF  60
STGSSTWHAH GESSKEDNPV FHFESSKEIQ VQHDSRATAT LETETDFSKD ARAIRERALK  120
QAEEALKGKA KSGDEKVYKG IHGYTDYKAG FRREQTVASE KAGGAHGPLR ASAHIRVSAR  180
FDYQPDICKD YKETGYCGFG DACKFMHDRG DYKSGWQLER EWEEAEKVRK RNLALGGDGE  240
DEDAGGDRSE EDEDDSLPFA CFICRQPFVD PVHHSKNKKC FVCNEPTLGI FNTAHEIRKK  300
MESGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-5094302113318RING finger protein 113A
5z58_M2e-5094302113318RING finger protein 113A
6ff4_t2e-5094302113318RING finger protein 113A
6ff7_t2e-5094302113318RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265576.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_019054276.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-147C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1U8Q8A70.0A0A1U8Q8A7_NELNU; zinc finger CCCH domain-containing protein 1
STRINGXP_010265576.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-144C3H family protein