PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013102-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 629aa    MW: 69491.9 Da    PI: 7.7533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013102-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29182241159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  NNU_013102-RA 182 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDRSVLVATYEGEHNHP 241
                    58***************************99****************************8 PP
2WRKY91.18.6e-29476535159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK  k+++ pr+Y+rC++  gCpvkkkv+r+ ed +v++ tYegeHnhe
  NNU_013102-RA 476 VKDGYQWRKYGQKITKDNPSPRAYFRCSMFpGCPVKKKVQRCLEDSSVLVATYEGEHNHE 535
                    58**************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28174243IPR003657WRKY domain
PROSITE profilePS5081126.704177243IPR003657WRKY domain
SuperFamilySSF1182906.8E-25179243IPR003657WRKY domain
SMARTSM007743.1E-33182242IPR003657WRKY domain
PfamPF031065.9E-24183241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-29469535IPR003657WRKY domain
PROSITE profilePS5081125.935471537IPR003657WRKY domain
SuperFamilySSF1182903.14E-25474536IPR003657WRKY domain
SMARTSM007741.5E-34476536IPR003657WRKY domain
PfamPF031062.2E-24477535IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MPAIDQFSPQ SVDSFSISTK AAAAAAAAMD STWLDTSLSF GLNVNPHQVT GESLKRELYT  60
DFLDLGRNHS VNQEAGELVE KLNQMSAENK KLTQLLTVMC ENYTTLQTQL KDLMSKNNET  120
GFTVSKKRKA ESMDNNNHNG VSGPTESTSS DEDSGKRIRE DIKTKISRVY VRTDASDTSL  180
VVKDGYQWRK YGQKVTRDNP SPRAYFKCSF APSCPVKKKV QRSAEDRSVL VATYEGEHNH  240
PHPSQAEGSL GSSHGVTLGS IPCSASIISS YSSGPTITLD LTQPGLGLTQ PGLGNNNVKK  300
PNEEVKSPAF QQFLVEQMAS SLTKDPSFTA ALAAAISGKI QQNSLVQKWE LPFNVCFPFI  360
SLLSTSTTHS PETMDAQPDI SQSHREKVQY LQEEIERLQK ENKNLSLLLE LIDRNYNSLR  420
AQLQLNKQIQ QRGCVAPTES CSSQDDSNKR AKIEIPRPKA SQVLFRTDSK DASLVVKDGY  480
QWRKYGQKIT KDNPSPRAYF RCSMFPGCPV KKKVQRCLED SSVLVATYEG EHNHEPEAHH  540
VSSSLTNGSM IVSITNFLPQ TSIDPVAPKV TLDLTLSGAN QEMKETHQRF VEDSNKNKVE  600
EYVASLTKDP SFTAALAAAV ARSFTQFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191815351374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265617.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
SwissprotQ9SAH74e-84WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A1U8ARI80.0A0A1U8ARI8_NELNU; probable WRKY transcription factor 40 isoform X1
STRINGXP_010265617.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-80WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  3. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  5. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  6. Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
    Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(7): p. 1568-1582
    [PMID:27328696]
  7. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  8. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]
  9. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]
  10. Zhang S, et al.
    The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
    Plant Physiol., 2017. 173(4): p. 2294-2307
    [PMID:28250067]
  11. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]