PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013112-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 505aa MW: 53148.9 Da PI: 6.5098

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013112-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.3e-12	310	355	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq NNU_013112-RA 310 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 355 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-17	303	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	307	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.71E-13	309	359	No hit	No description
Pfam	PF00010	3.6E-9	310	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MQPCSGEMQG MDSIPQMGLQ ELQNGQHQMP NQHHIHQGSH FDHSSHDDFL EQMLSNLPWT 60 ENLSGNPKSP WDLNPQNPNG NPTPNNNTAT SATATNQKLF NIPIATSNGK PGDLSDDQQT 120 SSQPENLQYG FDDSTLLASR LRQNQISGNS LAAKTLALQQ QLLLSRGGVG MAISPSSVPG 180 TSSQGGESGL RPLPLSLASA DSSDSRLLVD RSRDGVVDAS FKSPSPNGEA SVQGLYNGFA 240 GSLSRTAQTA DQQHFHNPQV ATMPAQNFSA PATTGINQAA LAAGAAGGVG AAPQRQQRVR 300 ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV 360 LSMSRLGGAA AVAPLVADIS SDGGGDCVQA SGGRSANGAQ TASSNDSLTA TEQQVAKLME 420 EDMGSAMQYL QGKGLCLMPI SLATAISTAT TCHSRNPNHT HHRLVSPNVD VPQSPSMSVL 480 TVQSVTMGNG GGEASVKDAT SISKP

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MQPCSGEMQG MDSIPQMGLQ ELQNGQHQMP NQHHIHQGSH FDHSSHDDFL EQMLSNLPWT  60
ENLSGNPKSP WDLNPQNPNG NPTPNNNTAT SATATNQKLF NIPIATSNGK PGDLSDDQQT  120
SSQPENLQYG FDDSTLLASR LRQNQISGNS LAAKTLALQQ QLLLSRGGVG MAISPSSVPG  180
TSSQGGESGL RPLPLSLASA DSSDSRLLVD RSRDGVVDAS FKSPSPNGEA SVQGLYNGFA  240
GSLSRTAQTA DQQHFHNPQV ATMPAQNFSA PATTGINQAA LAAGAAGGVG AAPQRQQRVR  300
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  360
LSMSRLGGAA AVAPLVADIS SDGGGDCVQA SGGRSANGAQ TASSNDSLTA TEQQVAKLME  420
EDMGSAMQYL QGKGLCLMPI SLATAISTAT TCHSRNPNHT HHRLVSPNVD VPQSPSMSVL  480
TVQSVTMGNG GGEASVKDAT SISKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	319	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265624.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	4e-87	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1U8AS61	0.0	A0A1U8AS61_NELNU; transcription factor bHLH66-like
STRING	XP_010265624.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-50	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]