PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013149-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 265aa    MW: 30089.5 Da    PI: 9.9925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013149-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1887135254
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  NNU_013149-RA  87 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 135
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-3586146No hitNo description
PROSITE profilePS5103221.1487144IPR001471AP2/ERF domain
SMARTSM003801.8E-4087150IPR001471AP2/ERF domain
PfamPF008473.8E-1187136IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2187146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3487144IPR001471AP2/ERF domain
PRINTSPR003675.1E-118899IPR001471AP2/ERF domain
PRINTSPR003675.1E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
KRRKNKTVVG PLSPTIWLPG KKDPSSVSTI SHEQQLHKPP HPPHSKPLFS CIVLCISLCN  60
SISQAFPQTV NHLKRFSHTT MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA  120
EDAARAYDEA ARLMCGPRAR TNFPYNPNAP QSSASKLLSA TLTEKLHRCH LASLQMTNSM  180
MKEPHKTPSP VVLSNNSITE DSKEMGMWSS SKRPAVQHPE TNWVVKKVQM ESSQQFKPLE  240
DDHIEQMIEE LLDYGSVELC SVLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1886149468ATERF1
3gcc_A3e-1886149468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265679.11e-136PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-76ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8ASA81e-135A0A1U8ASA8_NELNU; ethylene-responsive transcription factor ERF003-like
STRINGXP_010265679.11e-135(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]