PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013165-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 478aa    MW: 52461 Da    PI: 5.8145
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013165-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.32.2e-074164482254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp++e++++L +++gL+ +q+ +WF N+R +
  NNU_013165-RA 416 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 448
                    59*****************************87 PP
2ELK28.63.2e-10369390122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  NNU_013165-RA 369 ELKHELKQGYKEKIVDIREEIL 390
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19201245IPR005540KNOX1
PfamPF037909.0E-18203244IPR005540KNOX1
SMARTSM012566.1E-29257312IPR005541KNOX2
PfamPF037913.2E-21261311IPR005541KNOX2
SMARTSM011886.1E-4369390IPR005539ELK domain
PfamPF037891.1E-6369390IPR005539ELK domain
PROSITE profilePS512139.969369389IPR005539ELK domain
PROSITE profilePS5007111.677389452IPR001356Homeobox domain
SuperFamilySSF466898.13E-16391455IPR009057Homeodomain-like
SMARTSM003897.6E-11391456IPR001356Homeobox domain
CDDcd000861.96E-11392453No hitNo description
Gene3DG3DSA:1.10.10.609.2E-25396453IPR009057Homeodomain-like
PfamPF059201.4E-17409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAFHNHLSHE MALQHFTEQH LGENTAVLRS MIPEQLGQTS SDGAVGTGRE QKDIQRLMME  60
TAGKPQQQQP QPTQLGGGGG GGGPTWLNSA ILRQQNQYVD GSFLHLQTNS DSATSAASNQ  120
WLPRPILQRN TSDVGGGDDI PVSSDSMIAA AMSHGSADLN TNNDNRNSGS NQNQGNNSGG  180
GELAESEAGG GGDGVGTWQN ARYKADILAH PLYEQLLSAH VACLRIATPV DQLPRIDAQL  240
AQSQHVVAKY SVLGHGNQQL VGDDKELDQF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC  300
WEIEQSLQSL TGVSPGEGTG ATMSDDDDDQ ADSDPNLFDG GLDGPDSMGF GPLIPTESER  360
SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSLLKAWW QSHSKWPYPT  420
EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTAL KSKRKRSNAG ENSGERFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445465RKRNWHSNPSSSTALKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265705.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U8ADV50.0A0A1U8ADV5_NELNU; homeobox protein knotted-1-like 13 isoform X1
STRINGXP_010265705.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]