PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013166-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 235aa    MW: 25841.1 Da    PI: 9.0142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013166-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20129178255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr ++ +grW AeIrd       r r +lg+f+taeeAa+a++aa+++l+g
  NNU_013166-RA 129 SFRGVRKRP-WGRWSAEIRDrI----GRCRLWLGTFDTAEEAARAYDAAARRLRG 178
                    59*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-16128187No hitNo description
PROSITE profilePS5103222.879129186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29129186IPR001471AP2/ERF domain
SMARTSM003802.8E-34129192IPR001471AP2/ERF domain
PRINTSPR003674.6E-11130141IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21130186IPR016177DNA-binding domain
PfamPF008471.8E-14130178IPR001471AP2/ERF domain
PRINTSPR003674.6E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTNSESLPFF IKQQLFESSE TFQILKECPS YYYGPAITFA ELAEDNSTKD GIVSGGFSYG  60
GYNKDELPPV LEGIAAVVGP EILFGKSCCN GSKGRSEVVS ISVSQRFGSE APKTMEEKRR  120
VSSVTVEKSF RGVRKRPWGR WSAEIRDRIG RCRLWLGTFD TAEEAARAYD AAARRLRGSK  180
ARTNFEIPSP LPETSASSPC SSSSSVDKKK PRVQRSRSCI VVTSVAHLFG PATEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-17128187161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-171301851571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265708.11e-171PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLA0A1U8ASD51e-170A0A1U8ASD5_NELNU; ethylene-responsive transcription factor ERF084-like
STRINGXP_010265708.11e-171(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-25ERF family protein