PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013179-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 244aa MW: 27566.5 Da PI: 8.6294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013179-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++ +G g+W++ ++ g+ R++k+c++rw +yl NNU_013179-RA 14 KGAWTKEEDERLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.3	4.3e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ NNU_013179-RA 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.644	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.03E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.411	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPATHRPLS EPAAASDHVK TISFAAVAKE EEKVIGRLEC EEEEKNGRVE RFPDLNLELR 180 ISPPCQQQQQ IPEPLKSGGR TTLCFSCRLG LQNSKECSCS GSSSASDFLG LKTSILDYRS 240 LEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-31	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265977.1	1e-180	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-122	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1U8AFY7	1e-178	A0A1U8AFY7_NELNU; myb-related protein 308-like
STRING	XP_010265977.1	1e-179	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-105	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]