PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013352-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 268aa    MW: 30902.7 Da    PI: 6.5145
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013352-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-21102162257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  NNU_013352-RA 102 RQRWTPTPIQLQILERIFDQgNGTPSKQKIKEITSELtqhgQISETNVYNWFQNRRARSKR 162
                    89*****************99**************************************97 PP
2Wus_type_Homeobox100.21.5e-32101164265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
      NNU_013352-RA 101 ARQRWTPTPIQLQILERIFDQGNGTPSKQKIKEITSELTQHGQISETNVYNWFQNRRARSKRKQ 164
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-1896167IPR009057Homeodomain-like
PROSITE profilePS5007115.15998163IPR001356Homeobox domain
SMARTSM003891.3E-13100167IPR001356Homeobox domain
SuperFamilySSF466891.67E-18101166IPR009057Homeodomain-like
CDDcd000862.08E-13102164No hitNo description
PfamPF000464.0E-19102162IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGTVRNAVEG EEKVRIMEWE KQEQQQQQPQ QQQNAGVMYV KVMTDEQMEL LRKQISIYAT  60
ICEQLVEMHK AITAQQDLAG MRLGNLYCDP LMASSGHKIT ARQRWTPTPI QLQILERIFD  120
QGNGTPSKQK IKEITSELTQ HGQISETNVY NWFQNRRARS KRKQQVSIPN NAESEVETEV  180
ESPKEKKTKP ENIHFHENQA QKAEDLCFQS AEISSELHSL DPHPTKMEAT FPLDGTSKSS  240
GSLTHMSFYE SVLSNPIMYW HNFHSKEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266204.10.0PREDICTED: WUSCHEL-related homeobox 8 isoform X1
RefseqXP_010266205.10.0PREDICTED: WUSCHEL-related homeobox 8 isoform X1
SwissprotQ5QMM34e-88WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1U8AGH00.0A0A1U8AGH0_NELNU; WUSCHEL-related homeobox 8 isoform X1
STRINGXP_010266203.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-86WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]