PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013368-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 186aa    MW: 20673.6 Da    PI: 9.387
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013368-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.6e-169106195
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltp d+++ g + +p+ +++++        +++ +  ++t +d +g  W++++iy +++ r+ lt+GW++F + ++L +g ++vF+  ++++
  NNU_013368-RA   9 FSKILTPGDANNGGGFLVPRFCVDSIfpplnykAEPPVQ--MITARDVHGVMWDFRFIYPGTPHRHSLTNGWSKFINYKKLVAGYSMVFM--KNQT 100
                    889********************999****985444444..89***********************************************..5566 PP

                    E..EEE CS
             B3  90 felvvk 95 
                    +el+v+
  NNU_013368-RA 101 EELFVG 106
                    667775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-237107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-287117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-168105No hitNo description
PROSITE profilePS5086310.2789111IPR003340B3 DNA binding domain
PfamPF023623.2E-149106IPR003340B3 DNA binding domain
SMARTSM010196.5E-109108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVTLRILSFS KILTPGDANN GGGFLVPRFC VDSIFPPLNY KAEPPVQMIT ARDVHGVMWD  60
FRFIYPGTPH RHSLTNGWSK FINYKKLVAG YSMVFMKNQT EELFVGRTTR SSDSINYVQW  120
NYHVGSVASP IVKMEEGLGS GEGFSRSSRG RVSTEYAFGG CLLCESKFTG FCGQGRGGRG  180
IPQYSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-279106158255Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245064.14e-80PREDICTED: auxin response factor 17
SwissprotQ84WU61e-41ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1U7ZB881e-78A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010245064.12e-79(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-44auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]