PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013405-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 282aa MW: 31831.4 Da PI: 9.6938

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013405-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102	5.7e-32	12	103	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++k + k +r+ra tr+gCka+l+vk +++gkw+v+ +e+eHnHel+p NNU_013405-RA 12 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKEKPgiDGKVKRPRAITRVGCKAMLVVKIQDSGKWVVSGFEKEHNHELVP 103 ****************************************9999999999************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-30	12	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEFESEEAAK AFYNSYARRV GFSTRVSMSR RSRRDGAIIQ RSFVCAKEGF RVEKEKPGID 60 GKVKRPRAIT RVGCKAMLVV KIQDSGKWVV SGFEKEHNHE LVPPDKVHCL RSHRHFQEEL 120 VETLTFMATK MEDEGTGNIY RVAKFGEDHK AYIALKYVDE GAKTIDIYHV AMGALQEAAK 180 KVALAKKNGG RIPMVNGTNQ VDSVTDGSQA SYATGGNQWG LGQPQTMDEK DNKIMELSRE 240 LDRANRKCEV YRANLLTVLK DIEEQKLQLS VKVQNIKLSM KD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266298.1	2e-73	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	1e-49	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0B0PQS2	1e-110	A0A0B0PQS2_GOSAR; Far1-related sequence 5-like protein
STRING	XP_010266298.1	9e-73	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-51	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]