PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013406-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 690aa MW: 79486.1 Da PI: 8.8361

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013406-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	2e-21	2	76	19	91
FAR1 19 skkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 s++s+r+g i++r fvC keg+r e++k + k +r+ra tr+gCka+l+vk +++gkw+v+ +e+eHnHel+p NNU_013406-RA 2 SRRSRRDGAIIQRSFVCAKEGFRVEKEKPgsDGKVKRPRAITRVGCKAMLVVKIQDSGKWVVSGFEKEHNHELVP 76 57999****************99998877889999**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	2	76	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-32	197	289	IPR018289	MULE transposase domain
Pfam	PF04434	7.8E-12	465	511	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.855	477	513	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.8E-9	488	515	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MSRRSRRDGA IIQRSFVCAK EGFRVEKEKP GSDGKVKRPR AITRVGCKAM LVVKIQDSGK 60 WVVSGFEKEH NHELVPPDKV HCLRSHRHVS GSAKSLIDTL QGAGIGPSXI MSVLIKEYGX 120 ISXVGFTXRD CRNYMRSSRQ XTLGGDTQIL XDYLKHMHAX NPSFFYXVQG DEXQCMXNIF 180 WADPKARXNY TYFGDTVTFD TTYRSNRYRL PFAPFTGINH HGQPVLFGCA LLINESETSF 240 VWLFKTWLTA MSGHPPVSIT TDHDRVIRSA ITQVIPNTRH RFCKWHIFKE GQEKLSHVYL 300 EHPNFEAEFH KCVNLTESIE EFESCWLSLI DKYDLRENEW LQAIYNARRQ WVPVYLRDTF 360 FAEMSITQRS DSMNSYFDGY INASTTLQLL VKQYEKTLES RYEKEVKADY DTMNTAPILK 420 TPSPMEKQAA EVYTRKLFMK FQEELVETLT FMATKMEDEG TVNIYRVAKF GEDHKAYIVR 480 FNVLEMKATC SCQMFEFSGL LCRHILTVFR VTNVLTLPSQ YVLKRWTRNA KSGVVLEERA 540 SDLLNSCRES LTVRYNNLRH EALKYVDEGV KTIDIYHVAM GALQEAAKKV ALAKKSGGRI 600 PMVNGTNQVD IFNDGSQASY ATGSNQWGFG QPQTMDEKDK KIEELSRELD RANRKCEVYR 660 ANLLTVLKDI EEQKLQLSVK VQNIKLGMKD

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MSRRSRRDGA IIQRSFVCAK EGFRVEKEKP GSDGKVKRPR AITRVGCKAM LVVKIQDSGK  60
WVVSGFEKEH NHELVPPDKV HCLRSHRHVS GSAKSLIDTL QGAGIGPSXI MSVLIKEYGX  120
ISXVGFTXRD CRNYMRSSRQ XTLGGDTQIL XDYLKHMHAX NPSFFYXVQG DEXQCMXNIF  180
WADPKARXNY TYFGDTVTFD TTYRSNRYRL PFAPFTGINH HGQPVLFGCA LLINESETSF  240
VWLFKTWLTA MSGHPPVSIT TDHDRVIRSA ITQVIPNTRH RFCKWHIFKE GQEKLSHVYL  300
EHPNFEAEFH KCVNLTESIE EFESCWLSLI DKYDLRENEW LQAIYNARRQ WVPVYLRDTF  360
FAEMSITQRS DSMNSYFDGY INASTTLQLL VKQYEKTLES RYEKEVKADY DTMNTAPILK  420
TPSPMEKQAA EVYTRKLFMK FQEELVETLT FMATKMEDEG TVNIYRVAKF GEDHKAYIVR  480
FNVLEMKATC SCQMFEFSGL LCRHILTVFR VTNVLTLPSQ YVLKRWTRNA KSGVVLEERA  540
SDLLNSCRES LTVRYNNLRH EALKYVDEGV KTIDIYHVAM GALQEAAKKV ALAKKSGGRI  600
PMVNGTNQVD IFNDGSQASY ATGSNQWGFG QPQTMDEKDK KIEELSRELD RANRKCEVYR  660
ANLLTVLKDI EEQKLQLSVK VQNIKLGMKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266300.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8ATU2	0.0	A0A1U8ATU2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010266300.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]