PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013473-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 863aa    MW: 96699 Da    PI: 6.3801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013473-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.7e-10796850146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      +++WT+eE+e+l+++vk++ +       Wk+I +       k+Rt+ ++k+++++
    NNU_013473-RA 796 KNPWTAEEEEILLEGVKRFSSTdgkgfPWKKILEFGChvfhKTRTPVDLKDKYRN 850
                      689*****************99***********9888****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.4E-9463525IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.54E-8474525IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002493.7E-6480525IPR001965Zinc finger, PHD-type
PROSITE patternPS013590481524IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.027791852IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-10792852IPR009057Homeodomain-like
SuperFamilySSF466891.79E-10793852IPR009057Homeodomain-like
SMARTSM007174.2E-7795854IPR001005SANT/Myb domain
PfamPF002494.2E-7796850IPR001005SANT/Myb domain
CDDcd116608.72E-14798851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MLYATFPALL NPPRNHAPMN PFTSAGKHNL TPNNSSSLSQ THLVKSRLEM LKQEVQEFIS  60
QKSASLPKCV LEKLKDAIVE STHPLAASLR TRSGLDKENI DAKMHTSSDV MNQAPRESSV  120
EMGEEKAVTC SGEKDKGRIH LGGGDLNEDA KQNDNDDVAI ESPKESLIEM ANGKLLTCLD  180
EKDEKRIHCD DNDFNEATKG HDTSDDAIQA LKENSVEMAK EKVSTCLTEK PICFNDVNYR  240
ATKRPKLSIK ASEDQSLDPR PGSLSPKIRN ETLHDNALDS IIGGKGESAL SREGQAPCSD  300
KSRICVDGED CHANTNSLKE SKDGQIKSIE QNSGSLYENE HVQKDPPGKF LISAEKGILE  360
KETQVHGMVQ TVIFQDDCEN ASLQKQSSDN DENTHDLSPG NKIPLEACLN GSHQINVVTK  420
DENLNHVETH SCSDANHDKV ALFDLKDKIV IAMKKYRFLS FQSTSNHDSQ ATLDRIEQRR  480
CNKCNRGGQL LICCATNCQL AVHECCLGSP ASFDNNGNFY CPFCFYAEAI VAYHDAKKKI  540
SLARKSFAAF TGEKNEQQLK KQFENIHYEE TQSRRFGEVG FPRNIPDNKH QTEIIHKQSV  600
QAMEHQEAAN DSIEYKNGYI PCEGGKAPPV HEKNDIFLTE GDDSKQVDDN HNNLVMECHL  660
TKSYSNACSG NDLQVRDGEA FAMNEISDIS LTKEKAVVIE KHQSVDWREE NNKQVEADLK  720
HKSKNSPCRR REMVPLSQRL AGVRTRRQVL QGKFSSRPNI TTKETSEAEE DDISSNDSSR  780
DQKPISPKFP SLRRTKNPWT AEEEEILLEG VKRFSSTDGK GFPWKKILEF GCHVFHKTRT  840
PVDLKDKYRN IWTKGGPRIS PCW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266411.10.0PREDICTED: uncharacterized protein LOC104603935
RefseqXP_010266413.10.0PREDICTED: uncharacterized protein LOC104603935
RefseqXP_010266414.10.0PREDICTED: uncharacterized protein LOC104603935
TrEMBLA0A1U8AGZ50.0A0A1U8AGZ5_NELNU; uncharacterized protein LOC104603935
STRINGXP_010266411.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-06MYB_related family protein