PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013507-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 363aa    MW: 40359.8 Da    PI: 5.1122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013507-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29130189359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    Dgy WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+v++itY+g+H+++
  NNU_013507-RA 130 DGYGWRKYGQKDILGAKYPRAYYRCTHRnlqGCLATKQVQRSDEDPSVFDITYRGNHTCN 189
                    9**************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27127190IPR003657WRKY domain
SMARTSM007742.8E-39128190IPR003657WRKY domain
SuperFamilySSF1182903.79E-25129190IPR003657WRKY domain
PROSITE profilePS5081121.85130191IPR003657WRKY domain
PfamPF031068.4E-27130188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MENAGNWEKN ALLNELIQGR ELALKLQVLD SSSSAEMREM LVQKTLTTFD RALSILKWNG  60
LETETQPMEI VAGGMVDSPR SDSASPRSDD SDRPFKDQDR REISKKRKAL PRWTEQVRIG  120
SGVGLEGPLD GYGWRKYGQK DILGAKYPRA YYRCTHRNLQ GCLATKQVQR SDEDPSVFDI  180
TYRGNHTCNR ASHLVPASTS ADKPEQKQNQ DHLHPQELPN QQNQIQSQEI LLNLNTGLNV  240
QTNGLDSGEM MSSSFSFTST SIGCLKTENH IFSPSTLDNN FMGSYSPSFI SPATSESNYF  300
SMSPCRMNRL QGGHNLQTSE SDLTEIISAA TSATNSPIVD LDFPLGPGDF DTNFPFDTSG  360
FLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-201301881068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266464.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U8AH560.0A0A1U8AH56_NELNU; probable WRKY transcription factor 41
STRINGXP_010266464.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-52WRKY family protein