PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013582-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 691aa    MW: 76863.1 Da    PI: 5.9548
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013582-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23136236198
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k+lt sd++++g +++ +k+a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++e
  NNU_013582-RA 136 FCKILTASDTSTHGGFSVLRKHANEClppldMSQPTPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENGE 229
                    99*****************************77777888*************************************************..449999 PP

                    .EEEEE- CS
             B3  92 lvvkvfr 98 
                    l+v+v+r
  NNU_013582-RA 230 LRVGVRR 236
                    *****98 PP
2Auxin_resp105.46.7e-35262341183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++SkWrsL+
  NNU_013582-RA 262 ASHAVATQTLFIVYYKPRT--SQFIISLNKYLDAVNNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISS-HWKDSKWRSLE 341
                    789***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-40128251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-40133265IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-20134236No hitNo description
PfamPF023621.2E-21136236IPR003340B3 DNA binding domain
SMARTSM010199.1E-22136238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139136238IPR003340B3 DNA binding domain
PfamPF065071.8E-32262340IPR010525Auxin response factor
PfamPF023091.0E-7574635IPR033389AUX/IAA domain
SuperFamilySSF542771.83E-8594659No hitNo description
PROSITE profilePS5174517.006599686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MACGESFRSA TISQSNFSAE RPETGLGGGD LYAELWRACA GPLVDVPRTD ERVFYFPQGH  60
MEQLEASTNQ ELNNQTNLFN LPSKILCRVV HIQLLAEQET DEVYAQITLL PESDQNEPTS  120
PDPCPAESRR PIVHSFCKIL TASDTSTHGG FSVLRKHANE CLPPLDMSQP TPTQELAAKD  180
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGENGEL RVGVRRLARQ  240
QSTMPSSVIS SQSMHLGVLA TASHAVATQT LFIVYYKPRT SQFIISLNKY LDAVNNGFSV  300
GMRFKMRFEG EDSPERRFTG TIVGVGDISS HWKDSKWRSL EVQWDEPASI HRPERVSPWE  360
IEPFVASVPP SLTQPMAVKN KKPRTTMDPP VLETTASSAS SAFWYPGSTQ PHDFTQLSAE  420
GQSSDTQVVW PPKQKEKSSI VNSNSNCSSR NRPEGTWSSS PLVNVSLNLF QDRTEDGKSV  480
PAWSVLSRIS TTDSSKLSNS TLHDPMENGK KSEPSSGCRL FGIELINNSN VVAPADKTLP  540
GPVGVANATT EMLHSVTVSE ADSDQKSELS KASKEQKQNS LQVSPKEIQS KQSCCTSSRS  600
RIKVHMQGHA VGRAVDLSML EGYDQLINEL EEMFEIKGEL RPRNKWEVVY TDNEGDMMLG  660
VYQDGKENLH LLEPGSEEDE YEKQDSCIIS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-176123641355Auxin response factor 1
4ldw_A1e-176123641355Auxin response factor 1
4ldw_B1e-176123641355Auxin response factor 1
4ldx_A1e-176123641355Auxin response factor 1
4ldx_B1e-176123641355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266558.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U8AKP10.0A0A1U8AKP1_NELNU; Auxin response factor
STRINGXP_010266558.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9