PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013586-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Nin-like

Protein Properties

Length: 224aa MW: 25721.6 Da PI: 9.7541

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013586-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79	5.2e-25	104	152	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+led++++F+ pi++AAke++v+lTvLK++CR++ IkRWPhRkiksl NNU_013586-RA 104 SIDLEDIKRHFKVPITKAAKEMKVGLTVLKKRCRELQIKRWPHRKIKSL 152 699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	87	173	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-22	105	152	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MELMMWWQWQ NQVQELEFKY ANDDIYSDFG SFEASFPCYH ENRDNTIRKV APLNAVIMDG 60 SDDSGGNGSC IEIPTGITGA MVESSSSSSS TQQQKRFGRS KSISIDLEDI KRHFKVPITK 120 AAKEMKVGLT VLKKRCRELQ IKRWPHRKIK SLSSLIHNVK NRECEKELGM TEEIQKLEEH 180 KREMEKLPQM ALTEKTKKLR QVCFKAKYKM RRSLAAAAAA VATD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019054410.1	1e-168	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	2e-36	RKD4_ARATH; Protein RKD4
TrEMBL	A0A1U8Q8K1	1e-166	A0A1U8Q8K1_NELNU; protein RKD4-like
STRING	XP_010266632.1	1e-148	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-38	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]