PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013657-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 240aa MW: 27268.5 Da PI: 9.2301

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013657-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++k+ G g+W+t +++ g+ R++k+c++rw +yl NNU_013657-RA 15 RGPWTQEEDELLSSYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 62 89****************************99**********97 PP
2	Myb_DNA-binding	47.6	3.8e-15	73	113	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l NNU_013657-RA 73 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 113 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.614	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.49E-28	12	109	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-12	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-15	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-21	16	69	IPR009057	Homeodomain-like
CDD	cd00167	6.59E-10	17	62	No hit	No description
PROSITE profile	PS51294	24.653	63	117	IPR017930	Myb domain
SMART	SM00717	2.7E-13	67	115	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	70	118	IPR009057	Homeodomain-like
CDD	cd00167	6.17E-11	73	113	No hit	No description
Pfam	PF00249	6.4E-14	73	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRNRNSSSSA AGLKRGPWTQ EEDELLSSYI KREGEGRWRT LPKRAGLLRC GKSCRLRWMN 60 YLRPSIKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN THLSKKLISQ 120 GIDPRTHKPL NPNPNSSEEN INPPPPPPAS RPHPNPEPRV CGGATTTYKG KMHFTEMNLD 180 QDQSRKVGKG EENRTNSDGF MIGSRHGNNN EEDDIDCSTD EVFSSFLNSL INEDMLGNQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-25	13	117	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266681.1	1e-178	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	3e-79	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A1U8AHP9	1e-176	A0A1U8AHP9_NELNU; transcription repressor MYB5-like
STRING	XP_010266681.1	1e-177	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-76	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]