PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013666-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 236aa    MW: 25450.8 Da    PI: 7.0045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013666-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39401411101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC ++C++apyf  +q +++fa+vhk+FGasnv+kll ++p+++r+d++ ++ yeA+ar++dPvyG+v++il+lqqq++ l+ael+
  NNU_013666-RA  40 PCGACKFLRRKCISGCIFAPYFGTDQgAARFAAVHKVFGASNVSKLLLHVPTNRRHDTVVTISYEAQARLSDPVYGCVSTILALQQQVAALQAELS 135
                    7***********************9989******************************************************************** PP

         DUF260  96 llkeel 101
                    +++e+l
  NNU_013666-RA 136 VVQEQL 141
                    **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.06539141IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3840138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDMRQGGDTS EKASCNSRRG GAGKRPAAPS AAAVPSAAAP CGACKFLRRK CISGCIFAPY  60
FGTDQGAARF AAVHKVFGAS NVSKLLLHVP TNRRHDTVVT ISYEAQARLS DPVYGCVSTI  120
LALQQQVAAL QAELSVVQEQ LINNRLAVAN ALQLQMSTQQ HLSVLQPAFS NNSTASNNLV  180
TMSGLPSSFD LAIEMGPSPR SFEPLQLFQP MQDEDEDEEE IQNPVILENQ ILHRQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39301421112LOB family transfactor Ramosa2.1
5ly0_B3e-39301421112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266765.11e-175PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1U8AV031e-173A0A1U8AV03_NELNU; LOB domain-containing protein 20
STRINGXP_010266765.11e-174(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-55LOB domain-containing protein 20