PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013689-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WOX

Protein Properties

Length: 255aa MW: 27689.8 Da PI: 5.341

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013689-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.2	1.8e-15	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ NNU_013689-RA 22 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 82 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.4	8.7e-35	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q NNU_013689-RA 21 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.4E-14	15	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.159	18	83	IPR001356	Homeobox domain
SMART	SM00389	3.5E-6	20	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	21	86	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-13	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEDQVGDANN PSHGSERTEP VRSRWTPKPE QILILESIFN SGMVNPPKDE TVRIRKLLEK 60 FGTVGDANVF YWFQNRRSRS RRRQRQIQAG LAGDPRIPGR ATGAIQYEPT STSACFAASS 120 SPTFSSFPSS SSSSSSSSSS LVGSSSSSCG GDGVDDLFAI SRQMGVPETE QSPTVDSILC 180 PSDTPNFHYQ SGLITVFING IPTEVPRGPL DLRSIFGEDV MLVHSSGVPV PFNEYGVSTQ 240 SLQMGETYFL VPRQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019054443.1	0.0	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	2e-72	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A1U8Q6L1	0.0	A0A1U8Q6L1_NELNU; WUSCHEL-related homeobox 11
STRING	XP_010266735.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-35	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]