PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013709-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 297aa    MW: 34007.1 Da    PI: 9.4565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013709-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.4e-1717107199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk++     l +++l++p +f++++++  ++    +led++g +W vkl  +++s++++l++GW++F  ++ + +++f++F++dg+  f  +vk+
  NNU_013709-RA  17 FFKIM--LPGLPTQQLRIPPNFTRHISKRAAG--RAILEDRKGYRWFVKL--KQTSSGIYLGEGWQDFLVDHSILDNEFLLFRYDGNLIF--NVKI 104
                    78888..77888999********988766555..69**************..********************************998777..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f k
  NNU_013709-RA 105 FGK 107
                    876 PP
2B355.51e-17203287898
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    s+v     l +pk fa++h   ++++++++l++++g+sW v+l     +g++ l +GW  Fv++n+L+egD+++F+l+g  + e+ v++fr
  NNU_013709-RA 203 SNVYVGFVLHVPKWFAKSHL--PPCKTKIILNNSTGESWVVNL--LFIRGAHALCGGWPAFVRENKLEEGDICIFELVG--NLEMQVHIFR 287
                    55555667899******996..45899****************..55556689***********************998..6777899997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2210110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-2211110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.57815108IPR003340B3 DNA binding domain
CDDcd100171.46E-1515105No hitNo description
PfamPF023626.3E-1517107IPR003340B3 DNA binding domain
SMARTSM010193.9E-1517108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-25190287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-27191287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-22194287No hitNo description
SMARTSM010193.1E-13196289IPR003340B3 DNA binding domain
PROSITE profilePS5086314.536196289IPR003340B3 DNA binding domain
PfamPF023623.2E-15203287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVKRSENGSC QDRKHYFFKI MLPGLPTQQL RIPPNFTRHI SKRAAGRAIL EDRKGYRWFV  60
KLKQTSSGIY LGEGWQDFLV DHSILDNEFL LFRYDGNLIF NVKIFGKNGC ERDASTFTLK  120
TDQVSTFSNR REKGTSPSRN HVACACACAC ASPSLSKVCR DDPGKHLESR KRLATEEEKI  180
RVQEAAESFI SKFPYFKRRL NASNVYVGFV LHVPKWFAKS HLPPCKTKII LNNSTGESWV  240
VNLLFIRGAH ALCGGWPAFV RENKLEEGDI CIFELVGNLE MQVHIFRLFE EGKHVDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1316929022144B3 domain-containing transcription factor VRN1
4i1k_B2e-1316929022144B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266780.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_010266781.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_010266782.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_010266783.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_010266784.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1U8AHZ20.0A0A1U8AHZ2_NELNU; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_010266779.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-20B3 family protein