PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013913-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 453aa MW: 48869.4 Da PI: 5.0072

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013913-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	364	406	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR+ri +++ L++l+P K++ a++L +A +Y+k L NNU_013913-RA 364 MAARHRRERISERIRVLQRLVPGG-----SKMDTATMLDEAANYLKFL 406 56799***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.748	357	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	362	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	362	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-13	363	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	365	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-4	379	411	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MDCLGWDDPP LWSNEQHEIG EGSMASNANG GILGGKVDLY EGVLFDPNME LRRTRVYDTS 60 SDFEGVSKMV QQLAPVLDSI NAVRLAPDTV LASSGTGSTW TEALTAELGS SNVVSSSYGL 120 NPLNDIMADF GVVDRLRVVS SSVGAGRGGV SGTAGSLESL DCLLSATNSS TDTSMEDDGI 180 SVIFSDCKNL WNFNCGGAVS SGESENNGSN GSNKEMGCRV NELDEAVSQG SSNPCVNHAK 240 SSDARPDSSK RSKDEQELNV GPNNHYFNLL QSDSSTTEGG FRLISENPPK SKKPRLEKQR 300 SSNINFQQPN SSSSSAVEPD TEAIAQMKEM IYRAAAFRPV NLGLEVVEKP KRKNVRISSD 360 PQTMAARHRR ERISERIRVL QRLVPGGSKM DTATMLDEAA NYLKFLRSQV KALEALGHKV 420 PDAVNCTSTN LPFCSSPLNH PFPMQTFFSL PKP

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MDCLGWDDPP LWSNEQHEIG EGSMASNANG GILGGKVDLY EGVLFDPNME LRRTRVYDTS  60
SDFEGVSKMV QQLAPVLDSI NAVRLAPDTV LASSGTGSTW TEALTAELGS SNVVSSSYGL  120
NPLNDIMADF GVVDRLRVVS SSVGAGRGGV SGTAGSLESL DCLLSATNSS TDTSMEDDGI  180
SVIFSDCKNL WNFNCGGAVS SGESENNGSN GSNKEMGCRV NELDEAVSQG SSNPCVNHAK  240
SSDARPDSSK RSKDEQELNV GPNNHYFNLL QSDSSTTEGG FRLISENPPK SKKPRLEKQR  300
SSNINFQQPN SSSSSAVEPD TEAIAQMKEM IYRAAAFRPV NLGLEVVEKP KRKNVRISSD  360
PQTMAARHRR ERISERIRVL QRLVPGGSKM DTATMLDEAA NYLKFLRSQV KALEALGHKV  420
PDAVNCTSTN LPFCSSPLNH PFPMQTFFSL PKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267082.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	7e-89	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1U8AIQ6	0.0	A0A1U8AIQ6_NELNU; transcription factor bHLH87-like
STRING	XP_010267082.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-75	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]