PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013919-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 241aa    MW: 25841.5 Da    PI: 5.8575
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013919-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171491146
                     TSSS-HHHHHHHHHHHHHTTTT.................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.................................tWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd  l+++v+++G+g                                  W+ Ia++++ gRt++++k++w++
    NNU_013919-RA 14 RGPWSPEEDTALKNYVEKHGTGgnwialphkaglplslslslinlilshpelhemAWSVIASHLP-GRTDNDVKNYWNT 91
                     89***************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23535IPR009057Homeodomain-like
PROSITE profilePS5129413.982997IPR017930Myb domain
SuperFamilySSF466891.11E-121189IPR009057Homeodomain-like
SMARTSM007177.4E-141395IPR001005SANT/Myb domain
PfamPF002491.6E-141491IPR001005SANT/Myb domain
CDDcd001673.50E-111693No hitNo description
Gene3DG3DSA:1.10.10.602.0E-236997IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTALKNYVE KHGTGGNWIA LPHKAGLPLS LSLSLINLIL  60
SHPELHEMAW SVIASHLPGR TDNDVKNYWN TKLKKKMMGK NTLTSTNNSS SSSISINDNI  120
QFNSTPSHPV CPTKAEIVDY DFSSFLINTN SATQPLSTGG GYGQNVGSNS NRLVSDPTHF  180
SLPGLMEPSE FGTSTNNSYS VSSSQEFSGL SVSSSLGMDN SYGSWSGNGG DGDENGFLMD  240
L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267089.11e-120PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U8AV471e-119A0A1U8AV47_NELNU; transcription repressor MYB6-like
STRINGXP_010267089.11e-119(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-38MYB family protein