PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014023-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 528aa MW: 58105.5 Da PI: 6.7191

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014023-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35	4.7e-11	6	43	53	90
FAR1 53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++++tr+gC+akl vk+++ g+w+v+k+++eHnHe+a NNU_014023-RA 6 HNQPVTRVGCNAKLDVKRKNGGRWVVQKFDEEHNHECA 43 6899*******************************975 PP
2	FAR1	78.2	1.6e-24	88	189	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYneYA+ vGFsvrk+k +ks+ +g+i r+++Cskeg+++++ ++ ++ ++r++ ++r+gC+akl +kk ++gkw+v+k+ +e NNU_014023-RA 88 FYNEYARIVGFSVRKAKIRKSNIDGSILFRRLCCSKEGHSRKSLESdndetnqvkdgvaAKVSKRNHLVSRVGCNAKLDLKKANSGKWVVQKFCEE 183 9************************************99998888999***99889999*************************** PP FAR1 85 HnHela 90 HnHe+a NNU_014023-RA 184 HNHECA 189 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-8	7	42	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-21	88	189	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MKVGVHNQPV TRVGCNAKLD VKRKNGGRWV VQKFDEEHNH ECAHQGETHL LRSHKRKQST 60 QGPVNGTRAF SKPSVGMEFD SLDKAFLFYN EYARIVGFSV RKAKIRKSNI DGSILFRRLC 120 CSKEGHSRKS LESDNDETNQ VKDGVAAKVS KRNHLVSRVG CNAKLDLKKA NSGKWVVQKF 180 CEEHNHECAQ QGEIHLMRSH RCNQSTYGEL NDMTPDAGMK PMEAVPDLIR EADGNENPEQ 240 DLEYHSSEKL GKHKSSALHH KDSCCQHSDL YAKGETSTNA YQTEKHEIEM ALKEPGNFAH 300 EETSIVQPNI EDPKGLDFTV EVKNIVDSDF HLNGGNSENK LLCNPAHEKA EGKPPKRTIS 360 SLGEDKGKTK ARTGLKSDKH GDILLSPEPG SSEHNETTLL SAGPTSIEHD GPPSCSSKEG 420 VDDSCHVGEK DEQESQNCSG LSYVWPNVCV YACAPAGSLG DLNGQCHSSN ATNFGESLAG 480 LSCIQTSEPN IFDLNQELSV GSSSIPTSPM SHFAINQQTW LVPRTGGW

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MKVGVHNQPV TRVGCNAKLD VKRKNGGRWV VQKFDEEHNH ECAHQGETHL LRSHKRKQST  60
QGPVNGTRAF SKPSVGMEFD SLDKAFLFYN EYARIVGFSV RKAKIRKSNI DGSILFRRLC  120
CSKEGHSRKS LESDNDETNQ VKDGVAAKVS KRNHLVSRVG CNAKLDLKKA NSGKWVVQKF  180
CEEHNHECAQ QGEIHLMRSH RCNQSTYGEL NDMTPDAGMK PMEAVPDLIR EADGNENPEQ  240
DLEYHSSEKL GKHKSSALHH KDSCCQHSDL YAKGETSTNA YQTEKHEIEM ALKEPGNFAH  300
EETSIVQPNI EDPKGLDFTV EVKNIVDSDF HLNGGNSENK LLCNPAHEKA EGKPPKRTIS  360
SLGEDKGKTK ARTGLKSDKH GDILLSPEPG SSEHNETTLL SAGPTSIEHD GPPSCSSKEG  420
VDDSCHVGEK DEQESQNCSG LSYVWPNVCV YACAPAGSLG DLNGQCHSSN ATNFGESLAG  480
LSCIQTSEPN IFDLNQELSV GSSSIPTSPM SHFAINQQTW LVPRTGGW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267250.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010267251.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010267255.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X5
Refseq	XP_019054524.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A1U8AJ55	0.0	A0A1U8AJ55_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U8AJ57	0.0	A0A1U8AJ57_NELNU; protein FAR1-RELATED SEQUENCE 7-like isoform X5
TrEMBL	A0A1U8Q6U1	0.0	A0A1U8Q6U1_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X3
STRING	XP_010267250.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-23	FAR1-related sequence 5