PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014025-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 327aa    MW: 36513.2 Da    PI: 4.5039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014025-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09137179855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     E rRR+r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  NNU_014025-RA 137 SEGRRRSRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVQELQ 179
                    588*******************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14127193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.259129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-15131195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-11131181No hitNo description
SMARTSM003534.2E-11135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-7138179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MENPAFQTPQ AQFGDSGLFH DFIDDDNFEQ FISLIRGENA DPITAFNSNY DAELVFDHGL  60
LVESQSCPTT LGDTFAFNST CNSEPNSIFM PLPPFSGDVE GRDDENDGDG DDDSTAATTT  120
TKSENKTKGD RSRTLVSEGR RRSRMKEKLY ALRSLVPNIT KMDKASIVGD AVLYVQELQT  180
QANKLRAEIA ELESSFKGEE RYQSLXVDSP XKTKQAFAQK KHHPVCRQIL KMDIFQVEER  240
GFYVRVECNK GEGVTVALYK ALESLTGFHL QSSNCATVSD QRFVLTFTIN IVGECGEEMI  300
NLSSLKIWVA GAFLNQGFEY NNYVLSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054500.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A1U8Q8T90.0A0A1U8Q8T9_NELNU; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGXP_010267235.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-79FER-like regulator of iron uptake