PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014028-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 300aa MW: 31985.4 Da PI: 6.8351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014028-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H NNU_014028-RA 130 YECKTCNRCFPSFQALGGHRASH 152 99**********99999998887 PP
2	zf-C2H2	13.7	0.00019	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H NNU_014028-RA 206 HECSICGSEFSSGQALGGHMRRH 228 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.1E-11	129	154	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.64E-8	129	152	No hit	No description
PROSITE profile	PS50157	10.367	130	157	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	130	152	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.64E-8	201	228	No hit	No description
Pfam	PF13912	5.4E-12	205	230	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	206	228	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	206	233	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEVAEEVVGS NDQHSTHVVK GKRTKRQRPP SPFSAVAMAT SSSSGGGGGD GGAGGGDDGA 60 FHSPTTSAEF AESTEEEEDM ANCLILLAQG HSRDSPKRIE EGGGMEMRIS SRRFAEAATT 120 TSGKGGFYVY ECKTCNRCFP SFQALGGHRA SHKKPKAMAA EEKKALMVSS PEEDEAQFNN 180 VNSSPHLHLQ IAGNKASVYG NKSRVHECSI CGSEFSSGQA LGGHMRRHRS APTTATTITT 240 SPDSPEAKKP RTTNVLSLDL DLNLPAPTED VDHREPKFPF SSKQQPSLLF SASALVDCHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267264.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A1U8AMH2	0.0	A0A1U8AMH2_NELNU; zinc finger protein ZAT5
STRING	XP_010267264.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-49	C2H2 family protein