PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014044-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 415aa    MW: 45653.4 Da    PI: 8.1977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014044-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07242264123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk F+r  nL+ H+r H
  NNU_014044-RA 242 HYCHVCGKGFKRDANLRMHMRAH 264
                    68*******************99 PP
2zf-C2H211.10.0012337360123
                    EEETTTT.EEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                    y+C+ C+ k Fs  s+L++H + +
  NNU_014044-RA 337 YVCNRCNqKQFSVLSDLRTHEKHC 360
                    9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-6241267No hitNo description
PROSITE profilePS5015712.508242269IPR007087Zinc finger, C2H2
SMARTSM003550.0069242264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-6242301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SMARTSM00355180299332IPR015880Zinc finger, C2H2-like
SMARTSM0035522337359IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MISEVTSCFQ SGSQGLQMYG VGVADDVISS SLEDSSVAET QSSALLYSLS VLRDKVHQVQ  60
SLVSLVISPN NQAQPESTAM AIAGMGTLIQ EIIVTASSMM FTCQQMALGS TTVNNSSCHE  120
LHQHQHVKAS PGGVLPQPTG TGGREVQMGE GSDQRGFFAA GQQHLDWYGD NYNSNTNNSS  180
NNNVKPGITI SNSNTTTTYN NDVGEKELPN GVESDGGLHD FSPKNCDIIE LEAADLLAKF  240
THYCHVCGKG FKRDANLRMH MRAHGDEYKT SAALSNPMKN VSNSSMGYKG YSMKLPKKYS  300
CPHEGCRWNK KHAKFQPLKS MICAKNHYKR SHCPKMYVCN RCNQKQFSVL SDLRTHEKHC  360
GELKWQCTCG TTFSRKDKLM GHVALFVGHA PAVNSMMKQG KLDHHHHHHQ AVQIQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267289.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1U8AJ810.0A0A1U8AJ81_NELNU; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGXP_010267289.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-112C2H2 family protein