PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014194-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 154aa    MW: 17499.3 Da    PI: 6.3457
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014194-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3817115199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaC++lrr+C ++C lapyfp +++ +f  vhk+FG snv+k+l++++e+ered+++s+vyeA ar+rdPvyG++g i++lq+ +++l++el+l
  NNU_014194-RA  17 PCAACRMLRRRCGDNCLLAPYFPTQEADNFVGVHKVFGSSNVIKMLQTVKETEREDTVKSMVYEASARLRDPVYGSAGAIFHLQKLVKELESELDL 112
                    7*********************************************************************************************98 PP

         DUF260  97 lke 99 
                    +++
  NNU_014194-RA 113 IRA 115
                    876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.26516117IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-3917114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDVISRMAPV GAKINHPCAA CRMLRRRCGD NCLLAPYFPT QEADNFVGVH KVFGSSNVIK  60
MLQTVKETER EDTVKSMVYE ASARLRDPVY GSAGAIFHLQ KLVKELESEL DLIRARVLES  120
QEQQNQLLRI LMDVHHLPPI SPFEDIMFDC ENLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3581182112LOB family transfactor Ramosa2.1
5ly0_B5e-3581182112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267668.21e-112PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK083e-42LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1U8AK471e-111A0A1U8AK47_NELNU; LOB domain-containing protein 1-like
STRINGXP_010267668.11e-107(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-44LOB domain-containing protein 11