PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014217-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 684aa    MW: 76142.9 Da    PI: 6.6791
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014217-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22132231198
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                    f+k+lt sd++++g +++ +k+a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF    r +++
  NNU_014217-RA 132 FCKILTASDTSTHGGFSVLRKHANEClppldMNQPTPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL---RgEDG 224
                    99****************************977777788*************************************************...42455 PP

                    ..EEEEE- CS
             B3  91 elvvkvfr 98 
                     l+v+v+r
  NNU_014217-RA 225 -LRVGVRR 231
                    .7999987 PP
2Auxin_resp104.11.6e-34257336183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F+++++k+++a ++ +svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++SkWrsLk
  NNU_014217-RA 257 ASHAVATQTLFIVYYKPRT--SQFIISLNKYLDAANNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDVSS-NWKDSKWRSLK 336
                    789***************6..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-39124260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-38124246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-18130231No hitNo description
SMARTSM010192.6E-19132233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321132233IPR003340B3 DNA binding domain
PfamPF023628.7E-21132231IPR003340B3 DNA binding domain
PfamPF065072.7E-32257336IPR010525Auxin response factor
PfamPF023094.0E-6562605IPR033389AUX/IAA domain
PROSITE profilePS5174527.948569661IPR000270PB1 domain
SuperFamilySSF542771.67E-14570645No hitNo description
PfamPF023093.1E-6616651IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAYGDSCRGP TISQPNFSGE RPETDDLYVE LWRACAGPLV DVPRTDERVF YFPQGHMEQL  60
EASTNQELNH QNNLFNLPSK ILCRVVHIQL LVEPETDEVY AQITLLPESD QNEPTSPDPC  120
PPEHPRPAVH SFCKILTASD TSTHGGFSVL RKHANECLPP LDMNQPTPTQ ELAAKDLHGY  180
EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDAFVFLR GEDGLRVGVR RLARQHSTMP  240
SSVISSQSMH LGVLATASHA VATQTLFIVY YKPRTSQFII SLNKYLDAAN NGFSVGMRFK  300
MRFEGEDSPE RRFTGTIVGV GDVSSNWKDS KWRSLKVQWD ETASIQRPER VSPWEIEPFV  360
VSVPPSLTQP AAIKTKKLRP SVDLPVERAT GPATSAFWYP GSTQSNDLAQ ISRAEAQGSE  420
NQVGWLPKQQ KEIKGNVINS NSSCSSRTTS RPEGGWPSTL VNVSLSLFQD KIDGKTWSVL  480
SGFPTLDPSR STNSTLLDPV ENGKKSEPSA GCRLFGIELI NKSSVSTPDK APSRPESVTS  540
ATTEGLNPTT VSVSSKEIQS KQICGTYARS RIKVHMQGHA VGRAVDLTVL EGYDQLINEL  600
EEMFQIKGEL RPRNTWEVVY TDNEGDMMLV GDDPWLEFIN MARKIFIYSS EVVKKMSPRN  660
KIPTSSLEGE GTVVYLDSDL KTEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1702435916355Auxin response factor 1
4ldw_A1e-1702435916355Auxin response factor 1
4ldw_B1e-1702435916355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267580.10.0PREDICTED: auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U8AN700.0A0A1U8AN70_NELNU; Auxin response factor
STRINGXP_010267580.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9