PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014387-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 662aa MW: 74350.7 Da PI: 5.8923

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014387-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	427.6	1e-130	292	661	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ecA+a+s++ + +l ++ + +s +g+p+qRl ay++e+L ar s+ ++y+al+++e + s++ l+++++++e++P+lkf+++ NNU_014387-RA 292 LKQLLIECARALSENRTDDFMRLSEEARAAVSISGEPIQRLGAYILEGLVARKEASGANIYRALRCREPE---SKDLLSYMQILYEICPYLKFGYM 384 689****************************************************************9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +aN aI ea+ +e++vHiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+ + +le++g+rL + +++++p+ef++ + d++ NNU_014387-RA 385 AANGAIAEAFRSEDHVHIIDFQIAQGTQWMTLIQALAARPGGPPNVRITGIDDPVSKyaRGASLEAVGRRLDALSKKFNIPVEFHA-MPVFAPDVT 479 **************************************************9999999*********************.688899* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 e+L v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++Fl+rf+e+le+ysa+f+s++++lpr+ +eri+vE NNU_014387-RA 480 REMLGVRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFLTRFVETLEFYSAMFESIDVTLPRDRKERINVE 575 ********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++l+r+ivn++aceg+er+erhe l+kW++r+++aGF+p+pls+++++ +k llr ++ + y++ e++++++lgWkdr+L+s+SaW NNU_014387-RA 576 QHCLARDIVNIIACEGKERVERHELLGKWKSRFTMAGFRPYPLSSYVNSVIKGLLRCYS-EHYTLVEKDEAMLLGWKDRNLISASAW 661 ***************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.902	266	643	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-128	292	661	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MRDCSAQTSG AFSAIDRDFT AVVDSSVTKG IFCVLARNFE FLTTGEEEES LLKFLFVRME 60 ETTTFQTSNQ CNPLSMDLHQ LFRYNANDAD LSCDFSHATT PVTSEWMIRP MKFNLDSSPD 120 SPLSTHFDCD TFTSLSNSQE QYSSTGTDNL SGTSHCNSSL EINSSFHWKS PSSVHLPDSV 180 QLFSGGSSLS QDVNCGQSMK HVLQELENVL MGPDADEDEA TTSNAAFEGN KRLQISTHRS 240 RNWSQDPRPR GHVIQPQPIH ASKNKKLDRG VHEEKRRRAA DTSSHENVEV DLKQLLIECA 300 RALSENRTDD FMRLSEEARA AVSISGEPIQ RLGAYILEGL VARKEASGAN IYRALRCREP 360 ESKDLLSYMQ ILYEICPYLK FGYMAANGAI AEAFRSEDHV HIIDFQIAQG TQWMTLIQAL 420 AARPGGPPNV RITGIDDPVS KYARGASLEA VGRRLDALSK KFNIPVEFHA MPVFAPDVTR 480 EMLGVRPGEA LAVNFTLQLH HTPDESVDVN NPRDGLLRMV KSLSPKVVTL VEQESNTNTT 540 PFLTRFVETL EFYSAMFESI DVTLPRDRKE RINVEQHCLA RDIVNIIACE GKERVERHEL 600 LGKWKSRFTM AGFRPYPLSS YVNSVIKGLL RCYSEHYTLV EKDEAMLLGW KDRNLISASA 660 WH

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MRDCSAQTSG AFSAIDRDFT AVVDSSVTKG IFCVLARNFE FLTTGEEEES LLKFLFVRME  60
ETTTFQTSNQ CNPLSMDLHQ LFRYNANDAD LSCDFSHATT PVTSEWMIRP MKFNLDSSPD  120
SPLSTHFDCD TFTSLSNSQE QYSSTGTDNL SGTSHCNSSL EINSSFHWKS PSSVHLPDSV  180
QLFSGGSSLS QDVNCGQSMK HVLQELENVL MGPDADEDEA TTSNAAFEGN KRLQISTHRS  240
RNWSQDPRPR GHVIQPQPIH ASKNKKLDRG VHEEKRRRAA DTSSHENVEV DLKQLLIECA  300
RALSENRTDD FMRLSEEARA AVSISGEPIQ RLGAYILEGL VARKEASGAN IYRALRCREP  360
ESKDLLSYMQ ILYEICPYLK FGYMAANGAI AEAFRSEDHV HIIDFQIAQG TQWMTLIQAL  420
AARPGGPPNV RITGIDDPVS KYARGASLEA VGRRLDALSK KFNIPVEFHA MPVFAPDVTR  480
EMLGVRPGEA LAVNFTLQLH HTPDESVDVN NPRDGLLRMV KSLSPKVVTL VEQESNTNTT  540
PFLTRFVETL EFYSAMFESI DVTLPRDRKE RINVEQHCLA RDIVNIIACE GKERVERHEL  600
LGKWKSRFTM AGFRPYPLSS YVNSVIKGLL RCYSEHYTLV EKDEAMLLGW KDRNLISASA  660
WH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-63	294	662	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267831.1	0.0	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1U8AXR0	0.0	A0A1U8AXR0_NELNU; chitin-inducible gibberellin-responsive protein 1-like
STRING	XP_010267831.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]