PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014393-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 453aa    MW: 50501.9 Da    PI: 6.3403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014393-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS162.34.1e-50362272190
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 
                    ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ f++AL  r++r ++  ++   +++ + + +++++++++l  ++++ P+++f++
  NNU_014393-RA  36 EKLLLHCAGAIESDDVTLAQQVMWVLNNVASSVGDPNQRLTSWFLRALICRVSRICPAAMNFHGTTTLQ-RIQTRSMTVTQLagYVDLIPWHRFGF 130
                    689***************************************************999998877555554.34555556666678************ PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + N+ I +aveg  rvHi+Df+i++++QWp+L++aLa+Rpegpps+RiT+ +   ++    + +  e+g rLa+fA++ +vpfef+v+   + ++
  NNU_014393-RA 131 RASNSCIFKAVEGFPRVHILDFSITHCMQWPTLIDALAKRPEGPPSVRITVPSCRPPVpplLNVSSDEVGLRLANFAKSRDVPFEFHVI-KGSSSC 225
                    **************************************************9777656677999999*********************95.555555 PP

           GRAS 189 le 190
                    ++
  NNU_014393-RA 226 IN 227
                    55 PP
2GRAS120.91.6e-37251447183373
           GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........desvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfd 269
                    ++ +++l++++L+++ +Eal++n++  l +l+        +  + l+  r+++L+++k+l+P +v+vv++++d+  s+s++ r++ a++y +  fd
  NNU_014393-RA 251 ESLMAQLSPSMLHLRDDEALVINCQNWLRYLPvdpdddprSGAARLKPFRNAFLEMIKGLNPCIVTVVDEDLDLdVSSSLMSRITTAFNYLWIPFD 346
                    345889*************************97777665433344444899***********************9999****************** PP

           GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                    +le+  p+++ +r+ +E+  +g +i+n+++ eg +r+er e+  k ++r+++a F +vp+ e+++k++k ll +++  g+ ++ e + lvl+Wk++
  NNU_014393-RA 347 ALETL-PKDNPQRMEYEAD-IGHKIENILCFEGLQRIERLESGVKLSQRMKNANFISVPFCEDTVKEVKFLLDEHA-SGWGMKREGDMLVLTWKGH 439
                    **987.*************.********************************************************.8899*************** PP

           GRAS 366 pLvsvSaW 373
                    + v++SaW
  NNU_014393-RA 440 SSVFASAW 447
                    ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.4769429IPR005202Transcription factor GRAS
PfamPF035141.4E-4736227IPR005202Transcription factor GRAS
PfamPF035145.5E-35251447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MPVSLPANHG IFNNRQDSLS GALKGCLGSL DGACIEKLLL HCAGAIESDD VTLAQQVMWV  60
LNNVASSVGD PNQRLTSWFL RALICRVSRI CPAAMNFHGT TTLQRIQTRS MTVTQLAGYV  120
DLIPWHRFGF RASNSCIFKA VEGFPRVHIL DFSITHCMQW PTLIDALAKR PEGPPSVRIT  180
VPSCRPPVPP LLNVSSDEVG LRLANFAKSR DVPFEFHVIK GSSSCINASD DHHDHISLGE  240
YSSSNSNFHL ESLMAQLSPS MLHLRDDEAL VINCQNWLRY LPVDPDDDPR SGAARLKPFR  300
NAFLEMIKGL NPCIVTVVDE DLDLDVSSSL MSRITTAFNY LWIPFDALET LPKDNPQRME  360
YEADIGHKIE NILCFEGLQR IERLESGVKL SQRMKNANFI SVPFCEDTVK EVKFLLDEHA  420
SGWGMKREGD MLVLTWKGHS SVFASAWVPS GQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-452945081475Protein SHORT-ROOT
5b3h_B9e-462945027421Protein SHORT-ROOT
5b3h_E9e-462945027421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267838.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U8ANT20.0A0A1U8ANT2_NELNU; scarecrow-like protein 32
STRINGXP_010267838.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-108GRAS family protein