PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014413-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 468aa MW: 51424.1 Da PI: 5.4785

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014413-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.4e-05	359	396	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L NNU_014413-RA 359 RKEKLGDRITALQQLVSPF-----GKTDTASVLYEAIEYIKFL 396 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.649	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-11	357	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-5	357	401	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-8	361	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MADEFQTGIC SGNWWNNPTR NGFNGGSSPC STALNDTGSF GWPAEMVDMK ARSCEESASA 60 SDSSTAFQDT QKPQVTDSVG GGGVLMDSTL QIMGFGLSSP TTMDWNQALL RSSGRAQTNF 120 HSVLQEELSS RPSFRQETGM ESQLQKEWSP KNFCGSGEDS SVNAFRQINQ VYALDQQSLN 180 SVNSSSDCTV TACQGLPTSF PMVSSSYGCT STLLQGLFEP DPQPQQSSLE NRSINFPPST 240 SYHMDPNELS PSWPKFSQLL RSLPPKQQPT NQLHFPNNVP FWNATAAAMN EVRPSYFPSS 300 QTQFLTPTFE EKPSCSNLTA KSSTEEVRDS ATAVKKGSSE AVFKRPRIET PPMPTFKVRK 360 EKLGDRITAL QQLVSPFGKT DTASVLYEAI EYIKFLHDQV SVLSTPYMKN GAPMQHQQQN 420 SNKSKEADGH KPDLRSRGLC LVPISSTFPV TNETTADFWT PTFGGTYR

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MADEFQTGIC SGNWWNNPTR NGFNGGSSPC STALNDTGSF GWPAEMVDMK ARSCEESASA  60
SDSSTAFQDT QKPQVTDSVG GGGVLMDSTL QIMGFGLSSP TTMDWNQALL RSSGRAQTNF  120
HSVLQEELSS RPSFRQETGM ESQLQKEWSP KNFCGSGEDS SVNAFRQINQ VYALDQQSLN  180
SVNSSSDCTV TACQGLPTSF PMVSSSYGCT STLLQGLFEP DPQPQQSSLE NRSINFPPST  240
SYHMDPNELS PSWPKFSQLL RSLPPKQQPT NQLHFPNNVP FWNATAAAMN EVRPSYFPSS  300
QTQFLTPTFE EKPSCSNLTA KSSTEEVRDS ATAVKKGSSE AVFKRPRIET PPMPTFKVRK  360
EKLGDRITAL QQLVSPFGKT DTASVLYEAI EYIKFLHDQV SVLSTPYMKN GAPMQHQQQN  420
SNKSKEADGH KPDLRSRGLC LVPISSTFPV TNETTADFWT PTFGGTYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267864.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1U8AJM0	0.0	A0A1U8AJM0_NELNU; transcription factor bHLH112-like
STRING	XP_010267864.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-68	bHLH family protein