PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014459-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26716.3 Da    PI: 6.9121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014459-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.51.2e-201055247
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                   +ie + +rqvtf+kRr+g++ KA  L+ LCd++vav++fs+ g+ y
  NNU_014459-RA 10 KIERNERRQVTFCKRRKGLFQKAADLCLLCDVKVAVVVFSPAGRPY 55
                   7999**************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.535161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-25272IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGKRRIIIEK IERNERRQVT FCKRRKGLFQ KAADLCLLCD VKVAVVVFSP AGRPYIFGHP  60
SVDAILDLYL TGKNLVPDAH ANAKLSQLCN EIRTLQCELR NEQARWKLNC ACAENDTATR  120
GGESTLRYWW DSIDLEHCDD LLSLRNSLEK LKKNVLKRAE ELSLKAVGAD IGSTSSSSSV  180
GYGNDDEHSI QKIEASHDNF KHLPLHLDGG GVTHQIVTDV IKDDVKACLC GGGRAEEDGG  240
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267961.11e-178PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A1U8AP331e-177A0A1U8AP33_NELNU; agamous-like MADS-box protein AGL23
STRINGXP_010267961.11e-178(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-23AGAMOUS-like 62