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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_014473-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | WRKY | ||||||||
| Protein Properties | Length: 281aa MW: 31988.5 Da PI: 5.8488 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 93.5 | 1.5e-29 | 79 | 137 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC++ gC+++k+ver+++d ++++itY+++Hnh+
NNU_014473-RA 79 SDFWSWRKYGQKPIKGSPYPRGYYRCSTCkGCSARKQVERCRTDASMLIITYTSTHNHP 137
699***********************9877****************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 2.3E-31 | 72 | 139 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 9.94E-26 | 76 | 139 | IPR003657 | WRKY domain |
| SMART | SM00774 | 3.4E-34 | 78 | 138 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 30.94 | 79 | 139 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.6E-24 | 80 | 137 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 281 aa Download sequence Send to blast |
MREDSGVRMN MLQEGEEEAK EIHKRSTMNS PCEKTDSKTS KENKTENQAS KRRKVIQKTV 60 VTVRIEENAG GQKNEGPPSD FWSWRKYGQK PIKGSPYPRG YYRCSTCKGC SARKQVERCR 120 TDASMLIITY TSTHNHPGPD VHTNPNQGQP ILSTQPTVEE KLLPSTPQQQ QLEEPIIASD 180 EDTSKDHLQH LQSSHNCSQL DIITNQEENP STVDEQEKTH NPLSFLFHEK PLSFSPLMTF 240 STPKSEENDF FDELEELPIS SSFTSIMRSS SFDERILILP S |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5w3x_B | 5e-21 | 79 | 139 | 17 | 79 | Disease resistance protein RRS1 |
| 5w3x_D | 5e-21 | 79 | 139 | 17 | 79 | Disease resistance protein RRS1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010267989.1 | 0.0 | PREDICTED: probable WRKY transcription factor 69 | ||||
| TrEMBL | A0A1U8AXD9 | 0.0 | A0A1U8AXD9_NELNU; probable WRKY transcription factor 69 | ||||
| STRING | XP_010267989.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G58710.2 | 2e-38 | WRKY DNA-binding protein 69 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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