PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014478-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 318aa    MW: 35681.1 Da    PI: 4.8284
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014478-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-092482802355
                    SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yp++ee+ +LA+ +gL+++q+ +WF N+R ++
  NNU_014478-RA 248 PYPTEEEKMKLAEITGLDQKQINNWFINQRKRH 280
                    8*****************************885 PP
2ELK37.45.4e-13200221122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrKYsgyL+sL++EF+
  NNU_014478-RA 200 ELKEMLLRKYSGYLSSLRKEFL 221
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-195397IPR005540KNOX1
PfamPF037901.6E-185595IPR005540KNOX1
SMARTSM012562.0E-25101152IPR005541KNOX2
PfamPF037916.9E-25104151IPR005541KNOX2
PfamPF037893.3E-10200221IPR005539ELK domain
PROSITE profilePS5121311.366200220IPR005539ELK domain
SMARTSM011884.4E-7200221IPR005539ELK domain
PROSITE profilePS5007112.779220283IPR001356Homeobox domain
SMARTSM003897.8E-13222287IPR001356Homeobox domain
SuperFamilySSF466891.33E-19222289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-28225284IPR009057Homeodomain-like
CDDcd000863.75E-13232284No hitNo description
PfamPF059201.5E-17240279IPR008422Homeobox KN domain
PROSITE patternPS000270258281IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MENLYSINPT ISCSDEIAGV GNVALPSRFH RRLDNLLQFE PGEAEICGSE MSDLIKAQIA  60
NHPRYPNLVS AYIECRKVGA SPKLASLLEE IGRESYPSGA CSTEIGMDPE LDEFMESYCE  120
VLHKYKEELS KPFHEATTFL SNIETQLSNL CNITSTATTT TSGNSHSDDG AATSEEELSC  180
GAVEATESQE PCEPLTGDKE LKEMLLRKYS GYLSSLRKEF LKKRKKGKLP KDARMTLLDW  240
WNAHYRWPYP TEEEKMKLAE ITGLDQKQIN NWFINQRKRH WKPSEDVRFA LMEGVGGGSN  300
IPPMYFDSGG RGTASDDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215224LRKEFLKKRK
2221225KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267996.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotQ9FP291e-105KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A1U8AP790.0A0A1U8AP79_NELNU; homeobox protein knotted-1-like 1 isoform X2
STRINGXP_010267995.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.19e-81KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]