PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014525-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 201aa MW: 21990.7 Da PI: 7.626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014525-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H NNU_014525-RA 54 FECQYCGREFGNSQALGGHQNAH 76 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-6	50	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-5	51	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.487	54	81	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.4E-6	54	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MADPEIPVPM KPSSEDGNSD DISDRRSASV LKLFGFEVTE SDEVPATIQN SRKFECQYCG 60 REFGNSQALG GHQNAHKKER QRAKRAQFQS SRRFSAAVSP LLNPHAVRSG PFLYSGLPLG 120 IGAAAQLHSP TEYYASPPPM LSSLSSPRLP SWLYVSRPPQ FPVDPDVRPR PALSITQFSE 180 KMPEVEVGVD LHLSLAPSST S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268055.1	1e-145	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A1U8AK38	1e-144	A0A1U8AK38_NELNU; zinc finger protein 6-like
STRING	XP_010268055.1	1e-145	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	3e-14	C2H2 family protein