PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014568-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 251aa MW: 29309 Da PI: 6.0643

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014568-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.3	2.7e-28	81	170	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YAk++GF++r+++ ++s++n+e++ r++vCs+eg+r+ +++ +++ +r+ tr gCka+++v ++++gkw+vtk++ eHnH+l NNU_014568-RA 81 DFYYAYAKRTGFTIRTNRIRHSQKNREVIARDYVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMIRVALRDEGKWVVTKFVGEHNHKL 170 6***************************************9998822333349*******************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-26	81	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MMEKTSHDAF GLIESDKNIY DEAFDEHEKN EKELLEICDS QNVASSNMVL TEPSVEGLTV 60 SEDPLEPYTG MTFKSVDDAR DFYYAYAKRT GFTIRTNRIR HSQKNREVIA RDYVCSREGF 120 RAAKHTLRKD RVLPPRPITR EGCKAMIRVA LRDEGKWVVT KFVGEHNHKL IIQSKVSEDR 180 PAMNTLSEDE KDKKIQDLSN ELQHERQRSA YIQEQLHMIL KYLEEHAEYI SIRVEDIVNN 240 MKEIEYSGKS F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268145.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_010268146.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U8APN1	0.0	A0A1U8APN1_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010268145.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-46	FAR1 family protein