PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014574-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 281aa    MW: 32198.2 Da    PI: 8.8561
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014574-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR191.11.5e-2873165191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +fYn+YA+ +GFs+rk + ++s r++ +t+r fvCskeg+r e+++   + + +r+ a tr+gCka+l vk++ +g w+v++++ eHnHel+p
  NNU_014574-RA  73 EFYNAYARYMGFSIRKGAIYRSARQQAVTSRIFVCSKEGFRPESSDVneKGNIKRRMAITRVGCKAQLWVKRQPSGMWVVKQFQREHNHELTP 165
                    6****************************************99887633556788999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2673165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSAGPNQESS PSCGGREDGL FDNFPGLDIE KDLAEDTSVT EDSCGKEFTS SNMDVNLEPY  60
VGKEFKSEQA AREFYNAYAR YMGFSIRKGA IYRSARQQAV TSRIFVCSKE GFRPESSDVN  120
EKGNIKRRMA ITRVGCKAQL WVKRQPSGMW VVKQFQREHN HELTPMKVHI LRSHKNIFRN  180
LKEYVETLKG AGVDASQIQR LLLEEARGMG NLGARDNNAE SDDKRKIKEL SAELRRERRR  240
SATYREQLQM VLKHMEDHAH HLSKQIEDIV NNMKEVEHQG S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268165.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U8APQ20.0A0A1U8APQ2_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010268165.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-37FAR1-related sequence 5