PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014575-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 217aa MW: 24387.7 Da PI: 8.3241

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014575-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.4	1.2e-28	69	157	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA++vGF +r+ + ++s r+g++++r+f C+keg+r ++kk+ + + r++ra tr gCka+++v+kek+gkw+vtkle+eH+H+l NNU_014575-RA 69 YYDAYARRVGFIIRVGNCHRSGRDGSVISRRFLCNKEGFRVDNKKTkRLEVRKPRAITREGCKAMIMVRKEKSGKWVVTKLETEHTHPL 157 8*************************************9999884567789********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-28	69	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEPDADEDTK MIESSLGREA GGGETGAMVE IPIGRELNVS NGRELADLDG NIDPYIGMEF 60 ESEEAAMIYY DAYARRVGFI IRVGNCHRSG RDGSVISRRF LCNKEGFRVD NKKTKRLEVR 120 KPRAITREGC KAMIMVRKEK SGKWVVTKLE TEHTHPLGIP AGKGRRGTVQ ARPQASFRRS 180 LHMFSGCELK ESIEAWAKLE WGEERVVGVR DLTRDDA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268172.1	1e-125	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	8e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8AXU2	1e-124	A0A1U8AXU2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010268168.1	1e-122	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-40	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]