PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014578-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 242aa MW: 27607.5 Da PI: 9.5595

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014578-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.2	1.2e-27	81	168	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF +r sk +s+r+++++ r fvC+keg+r ++k+ +k ++ra tr+gCka++ v+k ++gkw+++k+e+eH+H+l+ NNU_014578-RA 81 FYSAYAMRVGFITRWSKLCRSRRDKSVIGRAFVCNKEGFRLPDKRC-RKGTKPRAPTRVGCKAMIAVRKLSSGKWVISKVEKEHSHPLM 168 9***************************************9999.99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-25	81	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDFGLHVGAD GETLENSIDM EVRAGHKCET LYSSSEGGPP RDQDKMTENS SGRELVIIQG 60 EPNLEPEVGM EFESEAAAHA FYSAYAMRVG FITRWSKLCR SRRDKSVIGR AFVCNKEGFR 120 LPDKRCRKGT KPRAPTRVGC KAMIAVRKLS SGKWVISKVE KEHSHPLMTP GKGRKGSIYD 180 QYPNEHERIR DLSQQLLLER RRSAAYKRHL ELIFKHIEEH TQNLSKKIQH IVDSVKEIES 240 EK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268176.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A1U8ALF5	1e-180	A0A1U8ALF5_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_010268175.1	1e-180	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-60	FAR1 family protein