PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014585-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 153aa    MW: 17146.6 Da    PI: 9.9609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014585-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-0534731054
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   + R ++  ++++ L++l+ +      +K + a++L +A+eYIk L
  NNU_014585-RA 34 KERKEKFGERIAALQQLVSPF-----GKTDTASVLLEAMEYIKFL 73
                   56677777899*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-102295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-62378No hitNo description
PROSITE profilePS5088812.0872473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-122491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00113079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MMTDYKRRPE SVDEGSLTCS EAKRQKTDFS ISPKERKEKF GERIAALQQL VSPFGKTDTA  60
SVLLEAMEYI KFLHDQVQVL SAPYLRSTRK IQESEQYSLS SRGLCLVPIS RTLSVVRSNG  120
ADIWAPIKAS SPSSKMPRPN FIDMVSTGIS RQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268189.11e-109PREDICTED: transcription factor bHLH113
RefseqXP_010268190.11e-109PREDICTED: transcription factor bHLH113
RefseqXP_010268191.11e-109PREDICTED: transcription factor bHLH113
RefseqXP_010268192.11e-109PREDICTED: transcription factor bHLH113
SwissprotQ7XJU24e-50BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1U8AKE91e-108A0A1U8AKE9_NELNU; transcription factor bHLH113
STRINGXP_010268188.11e-109(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-52bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]