PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014686-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32350.4 Da    PI: 5.6235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014686-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-131557749
                   HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +v fskRr+g++KKA+ L  L + + a+iifs+ gk+++y
  NNU_014686-RA 15 EKLNVCFSKRRTGLFKKAKKLDDLSGSKTAIIIFSPAGKVFTY 57
                   56689*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-18176IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.596161IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-151157IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRRRIKIEK IGCKEKLNVC FSKRRTGLFK KAKKLDDLSG SKTAIIIFSP AGKVFTYGDP  60
VVDSLIDRYL LLHHHQPHRL NKSSVATEDD NGKVDLNDSE DRMREIESLL MRGKENVMKR  120
VWEQQQKEPV IPRSSSCFQA ALLPNESLAG ISSYSSSSSL ETFGVNGFEN PVHLEQPESA  180
SAGVSSSSLW GFGAVGCEAE PERTELEFAT DPVLQPHLFF DIDELLKAFS DPLTPEEPTD  240
LNIDHHQQQQ LGRGFQNGEI LSESAAENPL EFPSYHRALT PPSQSWGVKI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268375.10.0PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A1U8AQ780.0A0A1U8AQ78_NELNU; agamous-like MADS-box protein AGL27
STRINGXP_010268375.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-20AGAMOUS-like 62