PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014767-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 376aa    MW: 42296.8 Da    PI: 6.2739
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014767-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.6e-13181226755
            AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++ +grW+A+I  ++    +k+ +lg++ t eeAa a++ a+ +++g
  NNU_014767-RA 181 CRHHHNGRWEARIGRVYG---NKYLYLGTYATQEEAAIAYDMAAIEYRG 226
                    68999********99654...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-1346143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-104668IPR001471AP2/ERF domain
PROSITE profilePS5103215.34346137IPR001471AP2/ERF domain
PRINTSPR003673.9E-54758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-10101138IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-7107139IPR016177DNA-binding domain
PRINTSPR003673.9E-5119139IPR001471AP2/ERF domain
PROSITE profilePS5103214.829169234IPR001471AP2/ERF domain
SMARTSM003803.7E-21177240IPR001471AP2/ERF domain
PfamPF008471.4E-8181226IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-15182236IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-15182235IPR001471AP2/ERF domain
CDDcd000188.88E-21182236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAKRTPQSQI NTANISNSSI INDEPTRVKR TRKSAPRESP PQRSSIFRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQG SSSPLSVIIF FFVSFYSTEV IGVLALSGAY NEEEAAAHAY  120
DLAALKYWGQ DTILNFPASL FLSHCLDINI PRRAKGNGGS VKGRVHWITE ESVLTPDFLI  180
CRHHHNGRWE ARIGRVYGNK YLYLGTYATQ EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK  240
CLRPKPDDSE NKPNPDSNPD QNPDHEHEPS FLHHQNSGDG GQTVVNAMPS DVDTNSSTLG  300
LLPQSPKFQE MLERKATADS PSTPPESDPD PRRFSFPDDI QTYFESHDSS SYADSDDVIF  360
GDLDLFVPSI LQNHCS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268477.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_010268478.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN43e-75AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8AL580.0A0A1U8AL58_NELNU; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A1U8AQG90.0A0A1U8AQG9_NELNU; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
STRINGXP_010268477.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-59ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]