PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014892-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WOX

Protein Properties

Length: 273aa MW: 30026.2 Da PI: 7.8455

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014892-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.4e-20	37	98	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ NNU_014892-RA 37 STRWTPTTDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 98 58***************8567***********************************97 PP
2	Wus_type_Homeobox	113.7	9e-37	36	100	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ NNU_014892-RA 36 SSTRWTPTTDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 100 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-11	29	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	33	99	IPR001356	Homeobox domain
SMART	SM00389	1.3E-5	35	103	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-17	38	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-7	38	98	IPR009057	Homeodomain-like
CDD	cd00086	2.32E-7	38	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEPQQQPAQQ MQQQQQPNED SSSSNTSKSS FLCRQSSTRW TPTTDQIRIL KDLYYNNGIR 60 SPSAEQIQRI SARLRQYGKI EGKNVFYWFQ NHKARERQKK RFTVDMAMQR SVATGGWKTG 120 DPIHNKYTNI SPGVSSPSSP GVLAAGQMGG TGYGPVLMEK SFRDCSISAG GSGIGGGGMC 180 NNLGWVGIDP YSSPYALFDK RKSIEYLEDQ TPQIETLPLF PTHGENIGGF CTGKADSGGY 240 FTDWYGPSDE KNDTPTSLEL SLNSCTTTSP DSP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447418	9e-71	AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268704.1	0.0	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	6e-95	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1U8AMM3	0.0	A0A1U8AMM3_NELNU; protein WUSCHEL
STRING	XP_010268704.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-44	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]