PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014897-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 242aa    MW: 27052.2 Da    PI: 9.506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014897-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-193984147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd++l ++v ++G ++W++I+r+++ gR++k+c++rw + 
    NNU_014897-RA 39 KGPWSTEEDKILTRLVDRYGARNWSLISRYIP-GRSGKSCRLRWCNQ 84
                     79******************************.***********985 PP
2Myb_DNA-binding53.46e-1793135347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
    NNU_014897-RA  93 PFSPAEDETILAAHARYGNR-WATIARILP-GRTDNAVKNHWNST 135
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4373489IPR017930Myb domain
SuperFamilySSF466892.73E-3137132IPR009057Homeodomain-like
SMARTSM007172.8E-163887IPR001005SANT/Myb domain
PfamPF002493.2E-183984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-254092IPR009057Homeodomain-like
CDDcd001671.01E-144183No hitNo description
SMARTSM007175.6E-1590138IPR001005SANT/Myb domain
PROSITE profilePS5129420.95691140IPR017930Myb domain
PfamPF002494.0E-1493135IPR001005SANT/Myb domain
CDDcd001671.54E-1193136No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2293139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEAFNTCSSS STSSSDSSSS ESSLPGKQVR AISKSERIKG PWSTEEDKIL TRLVDRYGAR  60
NWSLISRYIP GRSGKSCRLR WCNQLSPNVE HRPFSPAEDE TILAAHARYG NRWATIARIL  120
PGRTDNAVKN HWNSTLKRRQ REHRQPVGDN NNKNNGGRNL ELGSPSEMES DPLTTLTLAQ  180
PGVSCSLPER RMESFPAEFW DMMREVIARE VKNYVSSSVA ETVGLPTIEG IQGVSLHSTG  240
RY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-39361391104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268711.11e-179PREDICTED: transcription factor MYB44-like
SwissprotO231601e-56MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1U8AZU21e-178A0A1U8AZU2_NELNU; transcription factor MYB44-like
STRINGXP_010268711.11e-179(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-58myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]