PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014961-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 259aa    MW: 29306.9 Da    PI: 8.1336
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014961-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16741135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C +Cgt++TplWR+gp  ++ LCnaCG +yr kg+
  NNU_014961-RA  7 CYHCGTKNTPLWRNGPPEKPILCNACGSRYRIKGT 41
                   ****************66666**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-11159IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12551No hitNo description
CDDcd002025.45E-15641No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-13741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGKQGPCYHC GTKNTPLWRN GPPEKPILCN ACGSRYRIKG TLENYYPLHR PFSIFDSTNS  60
KTSEKNKSKA TKGLHIKVKN DTTMEGEEAF TRDSMCSTKF EDDIDDTSNR SSSESAILCS  120
ESCIHLESMD KKEISGSGQP SFWDQQIPSR KRSKIRRSST SLIEILRRDL IYTKQEKELC  180
YLSESSEDLL IYKREDARFS NEIGLGTVLL NHRPLSFKEE YESSSIVMKN MVSSLNDTNM  240
SPSSSSSSSS SCLYYTISK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054727.11e-121PREDICTED: uncharacterized protein LOC104605810 isoform X1
RefseqXP_019054728.11e-121PREDICTED: uncharacterized protein LOC104605810 isoform X2
TrEMBLA0A1U8Q7G91e-120A0A1U8Q7G9_NELNU; uncharacterized protein LOC104605810 isoform X1
STRINGAquca_082_00024.14e-63(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-37GATA transcription factor 26