PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014995-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21856.1 Da    PI: 9.5353
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014995-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvt+skRrngi+KKA+E+ vLCdaev+++ifsstgk+ ey+s
  NNU_014995-RA  9 KRIENSTNRQVTYSKRRNGIMKKAKEITVLCDAEVSLVIFSSTGKMSEYCS 59
                   79***********************************************96 PP
2K-box63.39.2e-2271133163
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 
                    yqkssgk+l++ak+e l++e++++kke++ +q e+Rhl+Ged++sL+ keL  +e++Le++l 
  NNU_014995-RA  71 YQKSSGKRLWDAKHEFLSNEIDRIKKENDAMQIELRHLKGEDINSLTPKELIPIEEALENGLM 133
                    899**********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-37296IPR002100Transcription factor, MADS-box
CDDcd002651.53E-42280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-1282133IPR002487Transcription factor, K-box
PROSITE profilePS512979.90384175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGIMK KAKEITVLCD AEVSLVIFSS TGKMSEYCSP  60
NTTLIKLLDR YQKSSGKRLW DAKHEFLSNE IDRIKKENDA MQIELRHLKG EDINSLTPKE  120
LIPIEEALEN GLMEYLKMLE KNHHQQMGID NGVREMENGY HQKGRNYSSS SMPLAFRVQP  180
IQPNLQESK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18171169MEF2C
5f28_B1e-18171169MEF2C
5f28_C1e-18171169MEF2C
5f28_D1e-18171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0486460.0GU048646.1 Nelumbo nucifera voucher FLAS:Yoo & Koh 1002 PI (PI) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269077.11e-132PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA252e-96MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1U8ARU11e-131A0A1U8ARU1_NELNU; floral homeotic protein PMADS 2
STRINGXP_010269077.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]